In a recent study, the oxadiazin‐5‐one‐based compound
CJ1‐34
was identified as a partial ATP synthase inhibitor, which was found to bind the F
1
region of the ATP synthase. These findings were used as a starting point for the design and synthesis of smaller heterocycles, such as pyrazolidine‐3‐ones and pyrazol‐3‐ones, as novel structural scaffolds for potential ATP synthase inhibitors. Among the newly synthesized compounds, pyrazolidin‐3‐one derivatives
9a
and
10a
outperformed the lead compound
CJ1‐34
in vitro by inhibiting ATP hydrolytic activity and decreasing ATP levels in HT‐22 cells. Subsequent dose‐dependent studies identified compound
9a
as the most promising ATP synthase inhibitor. Molecular docking revealed similar binding modes for all compounds in the F1‐binding site and the calculated docking scores aligned with the measured IC
50
values of the tested compounds. This study identified pyrazolidine‐3‐ones as promising structural scaffolds for ATP synthase inhibition, opening avenues for further biomedical applications in central nervous system diseases such as Alzheimer's and Parkinson's.